PDB Entry (4jme) |
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PDB ID: 4jme | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23758195 | DOI: 10.1021/bi400397k | |
Protein |
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Protein Name: Uncharacterized protein | |
Uniprot ID/ACC: Q643B8 (Q643B8_STRHY) | Organism: Streptomyces hygroscopicus |
Gene Symbol: mppR | Gene ID: - |
Protein Class: LYASE |
Ligand |
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Ligand Name: 2-keto-enduracididine | ||
Canonical SMILES: NC1=NC[C@@H](CC(=O)C(O)=O)N1 | ||
Standard InChI: InChI=1S/C6H9N3O3/c7-6-8-2-3(9-6)1-4(10)5(11)12/h3H,1-2H2,(H,11,12)(H3,7,8,9)/t3-/m1/s1 | ||
HET Code: ECD | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C6H9N3O3 | Mol. Weight: 171.06439 | logP: -1.6833 |
HBD: 3 | HBA: 5 | |
#Rotatable Bonds: 3 | TPSA: 104.78 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 156 | A | 8.83 | 7.54 | Ketone |
Binding Affinity |
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