PDB Entry (4jme)
PDB ID: 4jme Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23758195 DOI: 10.1021/bi400397k
Protein
Protein Name: Uncharacterized protein
Uniprot ID/ACC: Q643B8 (Q643B8_STRHY) Organism: Streptomyces hygroscopicus
Gene Symbol: mppR Gene ID: -
Protein Class: LYASE
Ligand
Ligand Name:   2-keto-enduracididine
Canonical SMILES:   NC1=NC[C@@H](CC(=O)C(O)=O)N1
Standard InChI:   InChI=1S/C6H9N3O3/c7-6-8-2-3(9-6)1-4(10)5(11)12/h3H,1-2H2,(H,11,12)(H3,7,8,9)/t3-/m1/s1
HET Code:   ECD PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C6H9N3O3 Mol. Weight:   171.06439 logP:   -1.6833
HBD:   3 HBA:   5
#Rotatable Bonds:   3 TPSA:   104.78
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 156 A 8.83 7.54 Ketone
Binding Affinity
-