PDB Entry (4etp)
PDB ID: 4etp Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22734002 DOI: 10.1083/jcb.201201132
Protein
Protein Name: Spindle pole body-associated protein VIK1
Uniprot ID/ACC: Q12045 (VIK1_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: VIK1 Gene ID: 855822
Protein Class: TRANSCRIPTION REGULATOR
Ligand
Ligand Name:   N,N'-ethane-1,2-diylbis(2-iodoacetamide)
Canonical SMILES:   ICC(=O)NCCNC(=O)CI
Standard InChI:   InChI=1S/C6H10I2N2O2/c7-3-5(11)9-1-2-10-6(12)4-8/h1-4H2,(H,9,11)(H,10,12)
HET Code:   EBC PubChem:   23678
DrugBank:   - ChEMBL:   CHEMBL1911792
Molecular Formula:   C6H10I2N2O2 Mol. Weight:   395.88318 logP:   0.0888
HBD:   2 HBA:   2
#Rotatable Bonds:   5 TPSA:   58.2
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 423 B 36.48 11.89 Halomethyl Carbonyl
Nucleophilic Aliphatic Subsititution CYS 355 B 47.19 10.22 Halomethyl Carbonyl
Binding Affinity
-