PDB Entry (5ezs) |
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PDB ID: 5ezs | Resolution: 2.16 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27030368 | DOI: 10.1021/acs.biochem.5b00992 | |
Protein |
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Protein Name: Polyprotein P1234 | |
Uniprot ID/ACC: P27282 (POLN_EEVVT) | Organism: Venezuelan equine encephalitis virus (strain Trinidad donkey) (VEEV) |
Gene Symbol: - | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: E64d | ||
Canonical SMILES: CCOC(=O)[C@@H]1O[C@H]1C(=O)N[C@@H](CC(C)C)C(=O)NCCC(C)C | ||
Standard InChI: InChI=1S/C17H30N2O5/c1-6-23-17(22)14-13(24-14)16(21)19-12(9-11(4)5)15(20)18-8-7-10(2)3/h10-14H,6-9H2,1-5H3,(H,18,20)(H,19,21)/t12-,13+,14+/m0/s1 | ||
HET Code: E6D | PubChem: 124305757 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C17H30N2O5 | Mol. Weight: 342.21548 | logP: 1.0101 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 10 | TPSA: 97.03 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | CYS 477 | A | 37.45 | 10.75 | Epoxide |
Binding Affinity |
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