PDB Entry (6l3m)
PDB ID: 6l3m Resolution: 1.77 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31777147 DOI: 10.1002/cbic.201900628
Protein
Protein Name: Polyketide synthase
Uniprot ID/ACC: Q8KUH4 (Q8KUH4_ACTPA) Organism: Actinosynnema pretiosum subsp. auranticum
Gene Symbol: asmB Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   2-METHOXYMALONIC ACID
Canonical SMILES:   COC(C(O)=O)C(O)=O
Standard InChI:   InChI=1S/C4H6O5/c1-9-2(3(5)6)4(7)8/h2H,1H3,(H,5,6)(H,7,8)
HET Code:   E5U PubChem:   14677212
DrugBank:   - ChEMBL:   -
Molecular Formula:   C4H6O5 Mol. Weight:   134.02153 logP:   -0.8294
HBD:   2 HBA:   3
#Rotatable Bonds:   3 TPSA:   83.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution SER 180 A 13.35 - Carboxylic Acid
Binding Affinity
-