PDB Entry (6l3m) |
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PDB ID: 6l3m | Resolution: 1.77 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31777147 | DOI: 10.1002/cbic.201900628 | |
Protein |
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Protein Name: Polyketide synthase | |
Uniprot ID/ACC: Q8KUH4 (Q8KUH4_ACTPA) | Organism: Actinosynnema pretiosum subsp. auranticum |
Gene Symbol: asmB | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 2-METHOXYMALONIC ACID | ||
Canonical SMILES: COC(C(O)=O)C(O)=O | ||
Standard InChI: InChI=1S/C4H6O5/c1-9-2(3(5)6)4(7)8/h2H,1H3,(H,5,6)(H,7,8) | ||
HET Code: E5U | PubChem: 14677212 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C4H6O5 | Mol. Weight: 134.02153 | logP: -0.8294 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 83.83 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | SER 180 | A | 13.35 | - | Carboxylic Acid |
Binding Affinity |
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