PDB Entry (6boz)
PDB ID: 6boz Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31081496 DOI: 10.7554/eLife.45403
Protein
Protein Name: N-lysine methyltransferase KMT5A
Uniprot ID/ACC: Q9NQR1 (KMT5A_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: KMT5A Gene ID: 387893
Protein Class: TRANSFERASE
Ligand
Ligand Name:   MS4138
Canonical SMILES:   COc1cc2c(NCCCNC(=O)C=C)nc(nc2cc1OCCN)N1CCCC1
Standard InChI:   InChI=1S/C21H30N6O3/c1-3-19(28)23-8-6-9-24-20-15-13-17(29-2)18(30-12-7-22)14-16(15)25-21(26-20)27-10-4-5-11-27/h3,13-14H,1,4-12,22H2,2H3,(H,23,28)(H,24,25,26)
HET Code:   E1J PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C21H30N6O3 Mol. Weight:   414.23795 logP:   1.6803
HBD:   3 HBA:   8
#Rotatable Bonds:   11 TPSA:   114.63
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 311 B 53.91 12.36 Vinyl Carbonyl
Binding Affinity
-