PDB Entry (2y2m)
PDB ID: 2y2m Resolution: 1.62 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21732689 DOI: 10.1021/CB2001846
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Gene Symbol: pbp1b Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   [(1S)-1-{[2-(propan-2-yl)phenyl]formamido}ethyl]boronic acid
Canonical SMILES:   OB(O)[C@@H](C)NC(=O)c1ccccc1C(C)C
Standard InChI:   InChI=1S/C12H18BNO3/c1-8(2)10-6-4-5-7-11(10)12(15)14-9(3)13(16)17/h4-9,16-17H,1-3H3,(H,14,15)/t9-/m1/s1
HET Code:   E08 PubChem:   53320256
DrugBank:   - ChEMBL:   CHEMBL1672905
Molecular Formula:   C12H18BNO3 Mol. Weight:   235.13797 logP:   0.9403
HBD:   3 HBA:   3
#Rotatable Bonds:   4 TPSA:   69.56
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 460 A 12.28 - Boronic Acid
Binding Affinity
-