PDB Entry (3gjr)
PDB ID: 3gjr Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19283487 DOI: 10.1007/s10495-009-0333-y
Protein
Protein Name: Caspase-3
Uniprot ID/ACC: P42574 (CASP3_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CASP3 Gene ID: 836
Protein Class: HYDROLASE
Ligand
Ligand Name:   Boc-D(OMe)-Fmk
Canonical SMILES:   COC(=O)C[C@@H](C(=O)C)NC(=O)OC(C)(C)C
Standard InChI:   InChI=1S/C11H19NO5/c1-7(13)8(6-9(14)16-5)12-10(15)17-11(2,3)4/h8H,6H2,1-5H3,(H,12,15)/t8-/m0/s1
HET Code:   DZE PubChem:   46937089
DrugBank:   DB07696 ChEMBL:   CHEMBL1232425
Molecular Formula:   C11H19NO5 Mol. Weight:   245.12633 logP:   1.0318
HBD:   1 HBA:   5
#Rotatable Bonds:   4 TPSA:   81.7
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 163 A 24.26 11.49 Ketone
Binding Affinity
-