PDB Entry (4r23)
PDB ID: 4r23 Resolution: 1.84 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Peptidoglycan glycosyltransferase
Uniprot ID/ACC: C8W8H7 (C8W8H7_ATOPD) Organism: Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) (Streptococcus parvulus) (Peptostreptococcus parvulus)
Gene Symbol: Apar_1344 Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   dicloxacillin
Canonical SMILES:   Cc1onc(c1C(=O)N[C@H]1[C@H]2SC(C)(C)[C@@H](N2C1=O)C(O)=O)-c1c(Cl)cccc1Cl
Standard InChI:   InChI=1S/C19H17Cl2N3O5S/c1-7-10(12(23-29-7)11-8(20)5-4-6-9(11)21)15(25)22-13-16(26)24-14(18(27)28)19(2,3)30-17(13)24/h4-6,13-14,17H,1-3H3,(H,22,25)(H,27,28)/t13-,14+,17-/m1/s1
HET Code:   DXU PubChem:   18381
DrugBank:   DB00485 ChEMBL:   CHEMBL893
Molecular Formula:   C19H17Cl2N3O5S Mol. Weight:   469.0266 logP:   3.20212
HBD:   2 HBA:   6
#Rotatable Bonds:   4 TPSA:   112.74
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 682 A 15.2 - Beta-Lactam
Binding Affinity
-