PDB Entry (3zg9) |
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PDB ID: 3zg9 | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: DD-transpeptidase | |
Uniprot ID/ACC: Q8Y547 (Q8Y547_LISMO) | Organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) |
Gene Symbol: lmo2229 | Gene ID: 984619 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Cefuroxime | ||
Canonical SMILES: CO\N=C(\C(=O)N[C@H]1[C@H]2SCC(COC(N)=O)=C(N2C1=O)C(O)=O)c1ccco1 | ||
Standard InChI: InChI=1S/C16H16N4O8S/c1-26-19-9(8-3-2-4-27-8)12(21)18-10-13(22)20-11(15(23)24)7(5-28-16(17)25)6-29-14(10)20/h2-4,10,14H,5-6H2,1H3,(H2,17,25)(H,18,21)(H,23,24)/b19-9+/t10-,14-/m1/s1 | ||
HET Code: DXF | PubChem: 5479529 | |
DrugBank: DB01112 | ChEMBL: CHEMBL1436 | |
Molecular Formula: C16H16N4O8S | Mol. Weight: 424.06888 | logP: -0.536 |
HBD: 3 | HBA: 9 | |
#Rotatable Bonds: 7 | TPSA: 173.76 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | SER 217 | B | 41.24 | - | Beta-Lactam |
Binding Affinity |
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