PDB Entry (3zg9)
PDB ID: 3zg9 Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: Q8Y547 (Q8Y547_LISMO) Organism: Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Gene Symbol: lmo2229 Gene ID: 984619
Protein Class: HYDROLASE
Ligand
Ligand Name:   Cefuroxime
Canonical SMILES:   CO\N=C(\C(=O)N[C@H]1[C@H]2SCC(COC(N)=O)=C(N2C1=O)C(O)=O)c1ccco1
Standard InChI:   InChI=1S/C16H16N4O8S/c1-26-19-9(8-3-2-4-27-8)12(21)18-10-13(22)20-11(15(23)24)7(5-28-16(17)25)6-29-14(10)20/h2-4,10,14H,5-6H2,1H3,(H2,17,25)(H,18,21)(H,23,24)/b19-9+/t10-,14-/m1/s1
HET Code:   DXF PubChem:   5479529
DrugBank:   DB01112 ChEMBL:   CHEMBL1436
Molecular Formula:   C16H16N4O8S Mol. Weight:   424.06888 logP:   -0.536
HBD:   3 HBA:   9
#Rotatable Bonds:   7 TPSA:   173.76
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 217 B 41.24 - Beta-Lactam
Binding Affinity
-