PDB Entry (6bl0)
PDB ID: 6bl0 Resolution: 2.17 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30004704 DOI: 10.1021/acs.jmedchem.8b00305
Protein
Protein Name: Isocitrate dehydrogenase [NADP] cytoplasmic
Uniprot ID/ACC: O75874 (IDHC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: IDH1 Gene ID: 3417
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   (5aS,6S,9aR)-2-benzoyl-6-methyl-7-oxo-9a-phenyl-2H,4H,5H,5aH,6H,7H,9aH-cyclohexa[g]indazole-8-carbonitrile
Canonical SMILES:   c1ccccc1[C@@]23[C@H]([C@H](C)C(=O)C(=C2)C#N)CCc4c3nn(c4)C(=O)c5ccccc5
Standard InChI:   InChI=1S/C26H21N3O2/c1-17-22-13-12-19-16-29(25(31)18-8-4-2-5-9-18)28-24(19)26(22,14-20(15-27)23(17)30)21-10-6-3-7-11-21/h2-11,14,16-17,22H,12-13H2,1H3/t17-,22-,26+/m0/s1
HET Code:   DWJ PubChem:   118291499
DrugBank:   - ChEMBL:   CHEMBL4540440
Molecular Formula:   C26H21N3O2 Mol. Weight:   407.1634 logP:   4.08888
HBD:   0 HBA:   5
#Rotatable Bonds:   2 TPSA:   75.75
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition HIS 315 A 43.13 2.88 Alpha-Cyanovinyl Carbonyl
Binding Affinity
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