PDB Entry (6bl1) |
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PDB ID: 6bl1 | Resolution: 2.02 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30004704 | DOI: 10.1021/acs.jmedchem.8b00305 | |
Protein |
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Protein Name: Isocitrate dehydrogenase [NADP] cytoplasmic | |
Uniprot ID/ACC: O75874 (IDHC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: IDH1 | Gene ID: 3417 |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: (6aS,7S,10aR)-7-methyl-8-oxo-10a-phenyl-2-(phenylamino)-5H,6H,6aH,7H,8H,10aH-cyclohexa[h]quinazoline-9-carbonitrile | ||
Canonical SMILES: c1ccccc1[C@@]23[C@H]([C@H](C)C(=O)C(=C2)C#N)CCc4c3nc(nc4)Nc5ccccc5 | ||
Standard InChI: InChI=1S/C26H22N4O/c1-17-22-13-12-18-16-28-25(29-21-10-6-3-7-11-21)30-24(18)26(22,14-19(15-27)23(17)31)20-8-4-2-5-9-20/h2-11,14,16-17,22H,12-13H2,1H3,(H,28,29,30)/t17-,22-,26+/m0/s1 | ||
HET Code: DWG | PubChem: 118290999 | |
DrugBank: - | ChEMBL: CHEMBL4535154 | |
Molecular Formula: C26H22N4O | Mol. Weight: 406.17935 | logP: 4.73748 |
HBD: 1 | HBA: 5 | |
#Rotatable Bonds: 3 | TPSA: 78.67 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | HIS 315 | B | 32.44 | 0.75 | Alpha-Cyanovinyl Carbonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 110 nM |
Binding MOAD | IC50 : 110 nM |