PDB Entry (6bib)
PDB ID: 6bib Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30883881 DOI: 10.1002/prot.25682
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   benzyl N-[(9S,12S,15S)-12-(cyclohexylmethyl)-9-formyl-6,11,14-trioxo-1,5,10,13,18,19-hexaazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate
Canonical SMILES:   c12cn(nn2)CCCNC(=O)CC[C@@H](C=O)NC(=O)[C@H](CC3CCCCC3)NC(=O)[C@H](C1)NC(=O)OCc4ccccc4
Standard InChI:   InChI=1S/C30H41N7O6/c38-19-23-12-13-27(39)31-14-7-15-37-18-24(35-36-37)17-26(34-30(42)43-20-22-10-5-2-6-11-22)29(41)33-25(28(40)32-23)16-21-8-3-1-4-9-21/h2,5-6,10-11,18-19,21,23,25-26H,1,3-4,7-9,12-17,20H2,(H,31,39)(H,32,40)(H,33,41)(H,34,42)/t23-,25-,26-/m0/s1
HET Code:   DW7 PubChem:   127043303
DrugBank:   - ChEMBL:   CHEMBL3827705
Molecular Formula:   C30H41N7O6 Mol. Weight:   595.3118 logP:   1.5546
HBD:   4 HBA:   9
#Rotatable Bonds:   6 TPSA:   173.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 13.03 14.28 Aldehyde
Binding Affinity
-