PDB Entry (6bid)
PDB ID: 6bid Resolution: 1.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30883881 DOI: 10.1002/prot.25682
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   benzyl N-[(8S,11S,14S)-11-(cyclohexylmethyl)-8-formyl-5,10,13-trioxo-1,4,9,12,17,18-hexaazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate
Canonical SMILES:   c12cn(nn2)CCNC(=O)CC[C@@H](C=O)NC(=O)[C@H](CC3CCCCC3)NC(=O)[C@H](C1)NC(=O)OCc4ccccc4
Standard InChI:   InChI=1S/C29H39N7O6/c37-18-22-11-12-26(38)30-13-14-36-17-23(34-35-36)16-25(33-29(41)42-19-21-9-5-2-6-10-21)28(40)32-24(27(39)31-22)15-20-7-3-1-4-8-20/h2,5-6,9-10,17-18,20,22,24-25H,1,3-4,7-8,11-16,19H2,(H,30,38)(H,31,39)(H,32,40)(H,33,41)/t22-,24-,25-/m0/s1
HET Code:   DW4 PubChem:   127043301
DrugBank:   - ChEMBL:   CHEMBL3828746
Molecular Formula:   C29H39N7O6 Mol. Weight:   581.2962 logP:   1.1645
HBD:   4 HBA:   9
#Rotatable Bonds:   6 TPSA:   173.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 12.2 14.23 Aldehyde
Binding Affinity
-