PDB Entry (2dns)
PDB ID: 2dns Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17331533 DOI: 10.1016/j.jmb.2006.10.070
Protein
Protein Name: D-Amino acid amidase
Uniprot ID/ACC: Q9LCC8 (Q9LCC8_OCHAN) Organism: Ochrobactrum anthropi
Gene Symbol: daaA Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   D-PHENYLALANINE
Canonical SMILES:   N[C@H](Cc1ccccc1)C(O)=O
Standard InChI:   InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/t8-/m1/s1
HET Code:   DPN PubChem:   71567
DrugBank:   DB02556 ChEMBL:   CHEMBL379630
Molecular Formula:   C9H11NO2 Mol. Weight:   165.07898 logP:   0.641
HBD:   2 HBA:   2
#Rotatable Bonds:   3 TPSA:   63.32
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution SER 60 E 14.07 - Carboxylic Acid
Binding Affinity
-