PDB Entry (2tod)
PDB ID: 2tod Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 10563800 DOI: 10.1021/bi9915115
Protein
Protein Name: Ornithine decarboxylase
Uniprot ID/ACC: P07805 (DCOR_TRYBB) Organism: Trypanosoma brucei brucei
Gene Symbol: - Gene ID: -
Protein Class: LYASE
Ligand
Ligand Name:   ALPHA-DIFLUOROMETHYLORNITHINE
Canonical SMILES:   NCCC[C@@](N)(C(F)F)C(O)=O
Standard InChI:   InChI=1S/C6H12F2N2O2/c7-4(8)6(10,5(11)12)2-1-3-9/h4H,1-3,9-10H2,(H,11,12)/t6-/m1/s1
HET Code:   DMO PubChem:   6992039
DrugBank:   DB03856 ChEMBL:   CHEMBL222838
Molecular Formula:   C6H12F2N2O2 Mol. Weight:   182.08669 logP:   -0.2275
HBD:   3 HBA:   3
#Rotatable Bonds:   5 TPSA:   89.34
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 360 A 63.39 14.37 Alkyl Halide
Binding Affinity
-