PDB Entry (3js3) |
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PDB ID: 3js3 | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21087925 | DOI: 10.1074/jbc.M110.192831 | |
Protein |
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Protein Name: 3-dehydroquinate dehydratase | |
Uniprot ID/ACC: Q186A6 (AROD_CLOD6) | Organism: Clostridioides difficile (strain 630) (Peptoclostridium difficile) |
Gene Symbol: aroD | Gene ID: 57297922 |
Protein Class: LYASE |
Ligand |
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Ligand Name: 3-dehydroquinate | ||
Canonical SMILES: O[C@@H]1C[C@@](O)(CC(=O)[C@H]1O)C(O)=O | ||
Standard InChI: InChI=1S/C7H10O6/c8-3-1-7(13,6(11)12)2-4(9)5(3)10/h3,5,8,10,13H,1-2H2,(H,11,12)/t3-,5+,7-/m1/s1 | ||
HET Code: DHS | PubChem: 439351 | |
DrugBank: DB03868 | ChEMBL: CHEMBL1232338 | |
Molecular Formula: C7H10O6 | Mol. Weight: 190.04774 | logP: -2.1132 |
HBD: 4 | HBA: 5 | |
#Rotatable Bonds: 1 | TPSA: 115.06 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 171 | A | 13.42 | 7.2 | Ketone |
Binding Affinity |
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