PDB Entry (3js3)
PDB ID: 3js3 Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21087925 DOI: 10.1074/jbc.M110.192831
Protein
Protein Name: 3-dehydroquinate dehydratase
Uniprot ID/ACC: Q186A6 (AROD_CLOD6) Organism: Clostridioides difficile (strain 630) (Peptoclostridium difficile)
Gene Symbol: aroD Gene ID: 57297922
Protein Class: LYASE
Ligand
Ligand Name:   3-dehydroquinate
Canonical SMILES:   O[C@@H]1C[C@@](O)(CC(=O)[C@H]1O)C(O)=O
Standard InChI:   InChI=1S/C7H10O6/c8-3-1-7(13,6(11)12)2-4(9)5(3)10/h3,5,8,10,13H,1-2H2,(H,11,12)/t3-,5+,7-/m1/s1
HET Code:   DHS PubChem:   439351
DrugBank:   DB03868 ChEMBL:   CHEMBL1232338
Molecular Formula:   C7H10O6 Mol. Weight:   190.04774 logP:   -2.1132
HBD:   4 HBA:   5
#Rotatable Bonds:   1 TPSA:   115.06
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 171 A 13.42 7.2 Ketone
Binding Affinity
-