PDB Entry (6ksm)
PDB ID: 6ksm Resolution: 2.23 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32214208 DOI: 10.1038/s41598-020-62427-8
Protein
Protein Name: Triacylglycerol lipase
Uniprot ID/ACC: A0A0U1MWF9 (A0A0U1MWF9_STAAU) Organism: Staphylococcus aureus
Gene Symbol: lip Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   Orlistat
Canonical SMILES:   CCCCCCCCCCC[C@H](OC(=O)[C@@H](NC=O)CC(C)C)C[C@@H]1OC(=O)[C@H]1CCCCCC
Standard InChI:   InChI=1S/C29H53NO5/c1-5-7-9-11-12-13-14-15-16-18-24(34-29(33)26(30-22-31)20-23(3)4)21-27-25(28(32)35-27)19-17-10-8-6-2/h22-27H,5-21H2,1-4H3,(H,30,31)/t24-,25-,26-,27-/m0/s1
HET Code:   DH9 PubChem:   3034010
DrugBank:   DB01083 ChEMBL:   CHEMBL175247
Molecular Formula:   C29H53NO5 Mol. Weight:   495.39236 logP:   6.8819
HBD:   1 HBA:   5
#Rotatable Bonds:   23 TPSA:   81.7
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Lactone Addition SER 116 A 10.65 - Beta-Lactone
Binding Affinity
-