PDB Entry (4bhf)

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Visualizer: MichelaNGLo

PDB ID: 4bhf Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24571165 DOI: 10.1021/jm401603e
Protein
Protein Name: Gamma-butyrobetaine dioxygenase
Protein Class: OXIDOREDUCTASE
Uniprot ID/ACC: O75936 (BODG_HUMAN) Organism: Homo sapiens
Gene Symbol: BBOX1 Gene ID: 8424
Pocket Descriptors
Volume: 750.016 Depth: 28.4253
Hydrophobicity: 0.705882 Drug Score: 0.337012
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-(Trimethylammonio)pentanoic acid
HET ID:   MZT PubChem:   73167559
DrugBank:   - ChEMBL:   -
Canonical SMILES:   C[C@@H]([N+](C)(C)C)CCC(=O)O
Standard InChI:   InChI=1S/C8H17NO2/c1-7(9(2,3)4)5-6-8(10)11/h7H,5-6H2,1-4H3/p+1/t7-/m1/s1
Molecular Formula:   C8H18NO2+ Mol. Weight:   160.23402 Heavy Atoms:   11
Charge:   1 Is Chiral:   True logP:   0.9459
HBD:   1 HBA:   2 TPSA:   37.3
#Bonds:   11 #Rotatable Bonds:   4 Shape Complexity:   0.875
Stereocomplexity:   0.125 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 4100 nM