PDB Entry (4bhf) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4bhf | Resolution: 2.05 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24571165 | DOI: 10.1021/jm401603e | |
Protein |
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Protein Name: Gamma-butyrobetaine dioxygenase | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: O75936 (BODG_HUMAN) | Organism: Homo sapiens |
Gene Symbol: BBOX1 | Gene ID: 8424 |
Pocket Descriptors | |
Volume: 750.016 | Depth: 28.4253 |
Hydrophobicity: 0.705882 | Drug Score: 0.337012 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 4-(Trimethylammonio)pentanoic acid | ||
HET ID: MZT | PubChem: 73167559 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: C[C@@H]([N+](C)(C)C)CCC(=O)O | ||
Standard InChI: InChI=1S/C8H17NO2/c1-7(9(2,3)4)5-6-8(10)11/h7H,5-6H2,1-4H3/p+1/t7-/m1/s1 | ||
Molecular Formula: C8H18NO2+ | Mol. Weight: 160.23402 | Heavy Atoms: 11 |
Charge: 1 | Is Chiral: True | logP: 0.9459 |
HBD: 1 | HBA: 2 | TPSA: 37.3 |
#Bonds: 11 | #Rotatable Bonds: 4 | Shape Complexity: 0.875 |
Stereocomplexity: 0.125 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 4100 nM |