PDB Entry (5fpa) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5fpa | Resolution: 1.96 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26771107 | DOI: 10.1021/acs.jmedchem.5b01537 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 830.336 | Depth: 21.1054 |
Hydrophobicity: 0.648045 | Drug Score: 0.568506 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3H-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: N5J | PubChem: 135567106, 590102 | |
DrugBank: - | ChEMBL: CHEMBL3770256 | |
Canonical SMILES: O=c1[nH]cnc2c1ccnc2 | ||
Standard InChI: InChI=1S/C7H5N3O/c11-7-5-1-2-8-3-6(5)9-4-10-7/h1-4H,(H,9,10,11) | ||
Molecular Formula: C7H5N3O | Mol. Weight: 147.1341 | Heavy Atoms: 11 |
Charge: 0 | Is Chiral: False | logP: 0.3181 |
HBD: 1 | HBA: 3 | TPSA: 58.64 |
#Bonds: 13 | #Rotatable Bonds: 0 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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