PDB Entry (5fpa)

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Visualizer: MichelaNGLo

PDB ID: 5fpa Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26771107 DOI: 10.1021/acs.jmedchem.5b01537
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 830.336 Depth: 21.1054
Hydrophobicity: 0.648045 Drug Score: 0.568506
Pocket Similarity: Calculate
Ligand
Ligand Name:   3H-pyrido[3,4-d]pyrimidin-4-one
HET ID:   N5J PubChem:   135567106, 590102
DrugBank:   - ChEMBL:   CHEMBL3770256
Canonical SMILES:   O=c1[nH]cnc2c1ccnc2
Standard InChI:   InChI=1S/C7H5N3O/c11-7-5-1-2-8-3-6(5)9-4-10-7/h1-4H,(H,9,10,11)
Molecular Formula:   C7H5N3O Mol. Weight:   147.1341 Heavy Atoms:   11
Charge:   0 Is Chiral:   False logP:   0.3181
HBD:   1 HBA:   3 TPSA:   58.64
#Bonds:   13 #Rotatable Bonds:   0 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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