PDB Entry (4bgm)

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Visualizer: MichelaNGLo

PDB ID: 4bgm Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24571165 DOI: 10.1021/jm401603e
Protein
Protein Name: Gamma-butyrobetaine dioxygenase
Protein Class: OXIDOREDUCTASE
Uniprot ID/ACC: O75936 (BODG_HUMAN) Organism: Homo sapiens
Gene Symbol: BBOX1 Gene ID: 8424
Pocket Descriptors
Volume: 801.472 Depth: 27.1392
Hydrophobicity: 0.681208 Drug Score: 0.38193
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-Carboxy-N-(2-fluoroethyl)-N,N-dimethylpropan-1-aminium
HET ID:   DLT PubChem:   70673858
DrugBank:   - ChEMBL:   CHEMBL3306341
Canonical SMILES:   FCC[N+](CCCC(=O)O)(C)C
Standard InChI:   InChI=1S/C8H16FNO2/c1-10(2,7-5-9)6-3-4-8(11)12/h3-7H2,1-2H3/p+1
Molecular Formula:   C8H17FNO2+ Mol. Weight:   178.22449 Heavy Atoms:   12
Charge:   1 Is Chiral:   False logP:   0.8971
HBD:   1 HBA:   2 TPSA:   37.3
#Bonds:   11 #Rotatable Bonds:   6 Shape Complexity:   0.875
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 610 nM