PDB Entry (4bgm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4bgm | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24571165 | DOI: 10.1021/jm401603e | |
Protein |
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Protein Name: Gamma-butyrobetaine dioxygenase | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: O75936 (BODG_HUMAN) | Organism: Homo sapiens |
Gene Symbol: BBOX1 | Gene ID: 8424 |
Pocket Descriptors | |
Volume: 801.472 | Depth: 27.1392 |
Hydrophobicity: 0.681208 | Drug Score: 0.38193 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-Carboxy-N-(2-fluoroethyl)-N,N-dimethylpropan-1-aminium | ||
HET ID: DLT | PubChem: 70673858 | |
DrugBank: - | ChEMBL: CHEMBL3306341 | |
Canonical SMILES: FCC[N+](CCCC(=O)O)(C)C | ||
Standard InChI: InChI=1S/C8H16FNO2/c1-10(2,7-5-9)6-3-4-8(11)12/h3-7H2,1-2H3/p+1 | ||
Molecular Formula: C8H17FNO2+ | Mol. Weight: 178.22449 | Heavy Atoms: 12 |
Charge: 1 | Is Chiral: False | logP: 0.8971 |
HBD: 1 | HBA: 2 | TPSA: 37.3 |
#Bonds: 11 | #Rotatable Bonds: 6 | Shape Complexity: 0.875 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 610 nM |