PDB Entry (4bgk)

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Visualizer: MichelaNGLo

PDB ID: 4bgk Resolution: 2.18 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24571165 DOI: 10.1021/jm401603e
Protein
Protein Name: Gamma-butyrobetaine dioxygenase
Protein Class: OXIDOREDUCTASE
Uniprot ID/ACC: O75936 (BODG_HUMAN) Organism: Homo sapiens
Gene Symbol: BBOX1 Gene ID: 8424
Pocket Descriptors
Volume: 652.992 Depth: 25.8566
Hydrophobicity: 0.707627 Drug Score: 0.17591
Pocket Similarity: Calculate
Ligand
Ligand Name:   trimethyl(3-oxidanylphosphonoylpropyl)azanium
HET ID:   RTK PubChem:   73167558
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OP(=O)CCC[N+](C)(C)C
Standard InChI:   InChI=1S/C6H16NO2P/c1-7(2,3)5-4-6-10(8)9/h10H,4-6H2,1-3H3/p+1
Molecular Formula:   C6H17NO2P+ Mol. Weight:   166.17844 Heavy Atoms:   10
Charge:   1 Is Chiral:   False logP:   0.5497
HBD:   2 HBA:   2 TPSA:   60.77
#Bonds:   9 #Rotatable Bonds:   4 Shape Complexity:   1.0
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 520 nM