PDB Entry (4bgk) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4bgk | Resolution: 2.18 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24571165 | DOI: 10.1021/jm401603e | |
Protein |
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Protein Name: Gamma-butyrobetaine dioxygenase | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: O75936 (BODG_HUMAN) | Organism: Homo sapiens |
Gene Symbol: BBOX1 | Gene ID: 8424 |
Pocket Descriptors | |
Volume: 652.992 | Depth: 25.8566 |
Hydrophobicity: 0.707627 | Drug Score: 0.17591 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: trimethyl(3-oxidanylphosphonoylpropyl)azanium | ||
HET ID: RTK | PubChem: 73167558 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OP(=O)CCC[N+](C)(C)C | ||
Standard InChI: InChI=1S/C6H16NO2P/c1-7(2,3)5-4-6-10(8)9/h10H,4-6H2,1-3H3/p+1 | ||
Molecular Formula: C6H17NO2P+ | Mol. Weight: 166.17844 | Heavy Atoms: 10 |
Charge: 1 | Is Chiral: False | logP: 0.5497 |
HBD: 2 | HBA: 2 | TPSA: 60.77 |
#Bonds: 9 | #Rotatable Bonds: 4 | Shape Complexity: 1.0 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 520 nM |