PDB Entry (4bg1) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4bg1 | Resolution: 1.89 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24571165 | DOI: 10.1021/jm401603e | |
Protein |
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Protein Name: Gamma-butyrobetaine dioxygenase | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: O75936 (BODG_HUMAN) | Organism: Homo sapiens |
Gene Symbol: BBOX1 | Gene ID: 8424 |
Pocket Descriptors | |
Volume: 867.456 | Depth: 33.6561 |
Hydrophobicity: 0.697329 | Drug Score: 0.6124 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-(3-carboxypropyl)-1-methylpyrrolidin-1-ium | ||
HET ID: IVL | PubChem: 21578870 | |
DrugBank: - | ChEMBL: CHEMBL3306340 | |
Canonical SMILES: OC(=O)CCC[N+]1(C)CCCC1 | ||
Standard InChI: InChI=1S/C9H17NO2/c1-10(6-2-3-7-10)8-4-5-9(11)12/h2-8H2,1H3/p+1 | ||
Molecular Formula: C9H18NO2+ | Mol. Weight: 172.24472 | Heavy Atoms: 12 |
Charge: 1 | Is Chiral: False | logP: 1.0504 |
HBD: 1 | HBA: 2 | TPSA: 37.3 |
#Bonds: 12 | #Rotatable Bonds: 4 | Shape Complexity: 0.8888889 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 490 nM |