PDB Entry (4bg1)

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Visualizer: MichelaNGLo

PDB ID: 4bg1 Resolution: 1.89 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24571165 DOI: 10.1021/jm401603e
Protein
Protein Name: Gamma-butyrobetaine dioxygenase
Protein Class: OXIDOREDUCTASE
Uniprot ID/ACC: O75936 (BODG_HUMAN) Organism: Homo sapiens
Gene Symbol: BBOX1 Gene ID: 8424
Pocket Descriptors
Volume: 867.456 Depth: 33.6561
Hydrophobicity: 0.697329 Drug Score: 0.6124
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-(3-carboxypropyl)-1-methylpyrrolidin-1-ium
HET ID:   IVL PubChem:   21578870
DrugBank:   - ChEMBL:   CHEMBL3306340
Canonical SMILES:   OC(=O)CCC[N+]1(C)CCCC1
Standard InChI:   InChI=1S/C9H17NO2/c1-10(6-2-3-7-10)8-4-5-9(11)12/h2-8H2,1H3/p+1
Molecular Formula:   C9H18NO2+ Mol. Weight:   172.24472 Heavy Atoms:   12
Charge:   1 Is Chiral:   False logP:   1.0504
HBD:   1 HBA:   2 TPSA:   37.3
#Bonds:   12 #Rotatable Bonds:   4 Shape Complexity:   0.8888889
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 490 nM