PDB Entry (5fpb)

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Visualizer: MichelaNGLo

PDB ID: 5fpb Resolution: 1.91 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26771107 DOI: 10.1021/acs.jmedchem.5b01537
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 1619.46 Depth: 30.2364
Hydrophobicity: 0.673295 Drug Score: 0.971832
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-(1H-pyrazol-4-yloxy)-3H-pyrido[3,4-d]pyrimidin-4-one
HET ID:   HA6 PubChem:   114286470, 135567124
DrugBank:   - ChEMBL:   CHEMBL3770916
Canonical SMILES:   O=c1[nH]c(Oc2c[nH]nc2)nc2c1ccnc2
Standard InChI:   InChI=1S/C10H7N5O2/c16-9-7-1-2-11-5-8(7)14-10(15-9)17-6-3-12-13-4-6/h1-5H,(H,12,13)(H,14,15,16)
Molecular Formula:   C10H7N5O2 Mol. Weight:   229.19489 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   0.8335
HBD:   2 HBA:   5 TPSA:   96.55
#Bonds:   21 #Rotatable Bonds:   2 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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