PDB Entry (5fpb) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5fpb | Resolution: 1.91 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26771107 | DOI: 10.1021/acs.jmedchem.5b01537 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 1619.46 | Depth: 30.2364 |
Hydrophobicity: 0.673295 | Drug Score: 0.971832 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-(1H-pyrazol-4-yloxy)-3H-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: HA6 | PubChem: 114286470, 135567124 | |
DrugBank: - | ChEMBL: CHEMBL3770916 | |
Canonical SMILES: O=c1[nH]c(Oc2c[nH]nc2)nc2c1ccnc2 | ||
Standard InChI: InChI=1S/C10H7N5O2/c16-9-7-1-2-11-5-8(7)14-10(15-9)17-6-3-12-13-4-6/h1-5H,(H,12,13)(H,14,15,16) | ||
Molecular Formula: C10H7N5O2 | Mol. Weight: 229.19489 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 0.8335 |
HBD: 2 | HBA: 5 | TPSA: 96.55 |
#Bonds: 21 | #Rotatable Bonds: 2 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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