PDB Entry (5fp9)

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Visualizer: MichelaNGLo

PDB ID: 5fp9 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26771107 DOI: 10.1021/acs.jmedchem.5b01537
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 816.704 Depth: 20.1157
Hydrophobicity: 0.666667 Drug Score: 0.614281
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-AMINOPYRIDINE-4-CARBOXYLIC ACID
HET ID:   4SV PubChem:   459531
DrugBank:   - ChEMBL:   CHEMBL1383671
Canonical SMILES:   OC(=O)c1ccncc1N
Standard InChI:   InChI=1S/C6H6N2O2/c7-5-3-8-2-1-4(5)6(9)10/h1-3H,7H2,(H,9,10)
Molecular Formula:   C6H6N2O2 Mol. Weight:   138.12404 Heavy Atoms:   10
Charge:   0 Is Chiral:   False logP:   0.9432
HBD:   2 HBA:   4 TPSA:   76.21
#Bonds:   10 #Rotatable Bonds:   1 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 1259 nM, IC50 : 1585 nM
Binding MOAD IC50 : 1585 nM