PDB Entry (5fp9) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5fp9 | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26771107 | DOI: 10.1021/acs.jmedchem.5b01537 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 816.704 | Depth: 20.1157 |
Hydrophobicity: 0.666667 | Drug Score: 0.614281 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-AMINOPYRIDINE-4-CARBOXYLIC ACID | ||
HET ID: 4SV | PubChem: 459531 | |
DrugBank: - | ChEMBL: CHEMBL1383671 | |
Canonical SMILES: OC(=O)c1ccncc1N | ||
Standard InChI: InChI=1S/C6H6N2O2/c7-5-3-8-2-1-4(5)6(9)10/h1-3H,7H2,(H,9,10) | ||
Molecular Formula: C6H6N2O2 | Mol. Weight: 138.12404 | Heavy Atoms: 10 |
Charge: 0 | Is Chiral: False | logP: 0.9432 |
HBD: 2 | HBA: 4 | TPSA: 76.21 |
#Bonds: 10 | #Rotatable Bonds: 1 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 1259 nM, IC50 : 1585 nM |
Binding MOAD | IC50 : 1585 nM |