PDB Entry (5fp7)

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Visualizer: MichelaNGLo

PDB ID: 5fp7 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26771203 DOI: 10.1021/acs.jmedchem.5b01538
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 984.0 Depth: 21.8248
Hydrophobicity: 0.663102 Drug Score: 0.601734
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-(4-phenylbutanoylamino)pyridine-4-carboxylic acid
HET ID:   YC8 PubChem:   64394751
DrugBank:   - ChEMBL:   CHEMBL3774845
Canonical SMILES:   O=C(Nc1cnccc1C(=O)O)CCCc1ccccc1
Standard InChI:   InChI=1S/C16H16N2O3/c19-15(8-4-7-12-5-2-1-3-6-12)18-14-11-17-10-9-13(14)16(20)21/h1-3,5-6,9-11H,4,7-8H2,(H,18,19)(H,20,21)
Molecular Formula:   C16H16N2O3 Mol. Weight:   284.30984 Heavy Atoms:   21
Charge:   0 Is Chiral:   False logP:   2.8142
HBD:   2 HBA:   5 TPSA:   79.29
#Bonds:   22 #Rotatable Bonds:   7 Shape Complexity:   0.1875
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 251 nM