PDB Entry (5fp8) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5fp8 | Resolution: 1.98 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26771107 | DOI: 10.1021/acs.jmedchem.5b01537 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 804.928 | Depth: 21.0827 |
Hydrophobicity: 0.675978 | Drug Score: 0.605142 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-[(4-methylthiophen-2-yl)methylamino]pyridine-4-carboxylic acid | ||
HET ID: AUY | PubChem: 114286469 | |
DrugBank: - | ChEMBL: CHEMBL3775834 | |
Canonical SMILES: Cc1csc(c1)CNc1cnccc1C(=O)O | ||
Standard InChI: InChI=1S/C12H12N2O2S/c1-8-4-9(17-7-8)5-14-11-6-13-3-2-10(11)12(15)16/h2-4,6-7,14H,5H2,1H3,(H,15,16) | ||
Molecular Formula: C12H12N2O2S | Mol. Weight: 248.30087 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 2.8348 |
HBD: 2 | HBA: 5 | TPSA: 90.46 |
#Bonds: 18 | #Rotatable Bonds: 4 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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