PDB Entry (5fp8)

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Visualizer: MichelaNGLo

PDB ID: 5fp8 Resolution: 1.98 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26771107 DOI: 10.1021/acs.jmedchem.5b01537
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 804.928 Depth: 21.0827
Hydrophobicity: 0.675978 Drug Score: 0.605142
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-[(4-methylthiophen-2-yl)methylamino]pyridine-4-carboxylic acid
HET ID:   AUY PubChem:   114286469
DrugBank:   - ChEMBL:   CHEMBL3775834
Canonical SMILES:   Cc1csc(c1)CNc1cnccc1C(=O)O
Standard InChI:   InChI=1S/C12H12N2O2S/c1-8-4-9(17-7-8)5-14-11-6-13-3-2-10(11)12(15)16/h2-4,6-7,14H,5H2,1H3,(H,15,16)
Molecular Formula:   C12H12N2O2S Mol. Weight:   248.30087 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   2.8348
HBD:   2 HBA:   5 TPSA:   90.46
#Bonds:   18 #Rotatable Bonds:   4 Shape Complexity:   0.16666667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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