PDB Entry (5h14)

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Visualizer: MichelaNGLo

PDB ID: 5h14 Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28072869 DOI: 10.1371/journal.pone.0169855
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 910.72 Depth: 30.9272
Hydrophobicity: 0.703804 Drug Score: 0.53699
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[3-(3,5-dimethylpyrazol-1-yl)-4-nitro-phenyl]-3,4-dihydro-1H-isoquinoline
HET ID:   LQB PubChem:   2905908
DrugBank:   - ChEMBL:   -
Canonical SMILES:   Cc1nn(c(c1)C)c1cc(ccc1[N+](=O)[O-])N1CCc2c(C1)cccc2
Standard InChI:   InChI=1S/C20H20N4O2/c1-14-11-15(2)23(21-14)20-12-18(7-8-19(20)24(25)26)22-10-9-16-5-3-4-6-17(16)13-22/h3-8,11-12H,9-10,13H2,1-2H3
Molecular Formula:   C20H20N4O2 Mol. Weight:   348.3984 Heavy Atoms:   26
Charge:   0 Is Chiral:   False logP:   4.5482
HBD:   0 HBA:   3 TPSA:   66.88
#Bonds:   29 #Rotatable Bonds:   3 Shape Complexity:   0.25
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 8760 nM