PDB Entry (5h13)

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Visualizer: MichelaNGLo

PDB ID: 5h13 Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28072869 DOI: 10.1371/journal.pone.0169855
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 374.848 Depth: 14.7946
Hydrophobicity: 0.685185 Drug Score: 0.251385
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-azanylidene-2-(3-methoxy-4-propan-2-yloxy-phenyl)-6,7-dihydro-[1,3]benzodioxolo[6,5-a]quinolizine-3-carbonitrile
HET ID:   LQA PubChem:   17581883
DrugBank:   - ChEMBL:   -
Canonical SMILES:   N#Cc1c(cc2n(c1=N)CCc1c2cc2OCOc2c1)c1ccc(c(c1)OC)OC(C)C
Standard InChI:   InChI=1S/C25H23N3O4/c1-14(2)32-21-5-4-15(8-22(21)29-3)17-10-20-18-11-24-23(30-13-31-24)9-16(18)6-7-28(20)25(27)19(17)12-26/h4-5,8-11,14,27H,6-7,13H2,1-3H3
Molecular Formula:   C25H23N3O4 Mol. Weight:   429.46783 Heavy Atoms:   32
Charge:   0 Is Chiral:   False logP:   4.35358
HBD:   1 HBA:   7 TPSA:   89.49
#Bonds:   36 #Rotatable Bonds:   4 Shape Complexity:   0.29166666
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 11580 nM