PDB Entry (5h13) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5h13 | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28072869 | DOI: 10.1371/journal.pone.0169855 | |
Protein |
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Protein Name: Polycomb protein EED | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75530 (EED_HUMAN) | Organism: Homo sapiens |
Gene Symbol: EED | Gene ID: 8726 |
Pocket Descriptors | |
Volume: 374.848 | Depth: 14.7946 |
Hydrophobicity: 0.685185 | Drug Score: 0.251385 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 4-azanylidene-2-(3-methoxy-4-propan-2-yloxy-phenyl)-6,7-dihydro-[1,3]benzodioxolo[6,5-a]quinolizine-3-carbonitrile | ||
HET ID: LQA | PubChem: 17581883 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: N#Cc1c(cc2n(c1=N)CCc1c2cc2OCOc2c1)c1ccc(c(c1)OC)OC(C)C | ||
Standard InChI: InChI=1S/C25H23N3O4/c1-14(2)32-21-5-4-15(8-22(21)29-3)17-10-20-18-11-24-23(30-13-31-24)9-16(18)6-7-28(20)25(27)19(17)12-26/h4-5,8-11,14,27H,6-7,13H2,1-3H3 | ||
Molecular Formula: C25H23N3O4 | Mol. Weight: 429.46783 | Heavy Atoms: 32 |
Charge: 0 | Is Chiral: False | logP: 4.35358 |
HBD: 1 | HBA: 7 | TPSA: 89.49 |
#Bonds: 36 | #Rotatable Bonds: 4 | Shape Complexity: 0.29166666 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 11580 nM |