PDB Entry (5arf)

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Visualizer: MichelaNGLo

PDB ID: 5arf Resolution: 1.92 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27075367 DOI: 10.1021/acs.jmedchem.5b01890
Protein
Protein Name: N-lysine methyltransferase SMYD2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) Organism: Homo sapiens
Gene Symbol: SMYD2 Gene ID: 56950
Pocket Descriptors
Volume: 2025.66 Depth: 40.9344
Hydrophobicity: 0.703872 Drug Score: 0.999948
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[3-(4-CHLOROPHENYL)-1-{N'-CYANO-N-[3-(DIFLUOROMETHOXY)PHENYL]CARBAMIMIDOYL}-4,5-DIHYDRO-1H- PYRAZOL-4-YL]-N-ETHYL-2-HYDROXYACETAMIDE
HET ID:   I9H PubChem:   137349547
DrugBank:   - ChEMBL:   -
Canonical SMILES:   N#C/N=C(/N1C[C@@H](C(=N1)c1ccc(cc1)Cl)N(C(=O)CO)CC)Nc1cccc(c1)OC(F)F
Standard InChI:   InChI=1S/C22H21ClF2N6O3/c1-2-30(19(33)12-32)18-11-31(29-20(18)14-6-8-15(23)9-7-14)22(27-13-26)28-16-4-3-5-17(10-16)34-21(24)25/h3-10,18,21,32H,2,11-12H2,1H3,(H,27,28)/t18-/m0/s1
Molecular Formula:   C22H21ClF2N6O3 Mol. Weight:   490.89035 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   2.56618
HBD:   2 HBA:   9 TPSA:   113.55
#Bonds:   37 #Rotatable Bonds:   10 Shape Complexity:   0.2857143
Stereocomplexity:   0.045454547 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 800 nM