PDB Entry (2vvc)

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Visualizer: MichelaNGLo

PDB ID: 2vvc Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19200624 DOI: 10.1016/j.ejmech.2008.12.025
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 592.064 Depth: 24.4676
Hydrophobicity: 0.683761 Drug Score: 0.0720082
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-chloro-N-[(3S,4S)-1-(2-{[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]amino}-2-oxoethyl)-4-methoxypyrrolidin-3-yl]thiophene-2-carboxamide
HET ID:   LZF PubChem:   11979007
DrugBank:   - ChEMBL:   CHEMBL551393
Canonical SMILES:   CO[C@H]1CN(C[C@@H]1NC(=O)c1ccc(s1)Cl)CC(=O)Nc1ccc(cc1F)n1ccccc1=O
Standard InChI:   InChI=1S/C23H22ClFN4O4S/c1-33-18-12-28(11-17(18)27-23(32)19-7-8-20(24)34-19)13-21(30)26-16-6-5-14(10-15(16)25)29-9-3-2-4-22(29)31/h2-10,17-18H,11-13H2,1H3,(H,26,30)(H,27,32)/t17-,18-/m0/s1
Molecular Formula:   C23H22ClFN4O4S Mol. Weight:   504.96158 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   3.161
HBD:   2 HBA:   9 TPSA:   120.91
#Bonds:   39 #Rotatable Bonds:   9 Shape Complexity:   0.26086956
Stereocomplexity:   0.08695652 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 3 nM
BindingDB Ki : 3 nM, Ki : 3000 nM