PDB Entry (2vvc) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2vvc | Resolution: 1.95 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19200624 | DOI: 10.1016/j.ejmech.2008.12.025 | |
Protein |
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Protein Name: Coagulation factor X | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00742 (FA10_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F10 | Gene ID: 2159 |
Pocket Descriptors | |
Volume: 592.064 | Depth: 24.4676 |
Hydrophobicity: 0.683761 | Drug Score: 0.0720082 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-chloro-N-[(3S,4S)-1-(2-{[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]amino}-2-oxoethyl)-4-methoxypyrrolidin-3-yl]thiophene-2-carboxamide | ||
HET ID: LZF | PubChem: 11979007 | |
DrugBank: - | ChEMBL: CHEMBL551393 | |
Canonical SMILES: CO[C@H]1CN(C[C@@H]1NC(=O)c1ccc(s1)Cl)CC(=O)Nc1ccc(cc1F)n1ccccc1=O | ||
Standard InChI: InChI=1S/C23H22ClFN4O4S/c1-33-18-12-28(11-17(18)27-23(32)19-7-8-20(24)34-19)13-21(30)26-16-6-5-14(10-15(16)25)29-9-3-2-4-22(29)31/h2-10,17-18H,11-13H2,1H3,(H,26,30)(H,27,32)/t17-,18-/m0/s1 | ||
Molecular Formula: C23H22ClFN4O4S | Mol. Weight: 504.96158 | Heavy Atoms: 34 |
Charge: 0 | Is Chiral: True | logP: 3.161 |
HBD: 2 | HBA: 9 | TPSA: 120.91 |
#Bonds: 39 | #Rotatable Bonds: 9 | Shape Complexity: 0.26086956 |
Stereocomplexity: 0.08695652 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 3 nM |
BindingDB | Ki : 3 nM, Ki : 3000 nM |