PDB Entry (1g2m)

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Visualizer: MichelaNGLo

PDB ID: 1g2m Resolution: 3.02 Å Exp. Method: X-RAY DIFFRACTION
PMID: 11342132 DOI: 10.1016/S0969-2126(00)00551-7
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 459.904 Depth: 20.2307
Hydrophobicity: 0.635802 Drug Score: 0.20477
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-{[1-METHYL-5-(2-METHYL-BENZOIMIDAZOL-1-YLMETHYL)-1H-BENZOIMIDAZOL-2-YLMETHYL]-AMINO}-BENZAMIDINE
HET ID:   R11 PubChem:   445756
DrugBank:   DB02354 ChEMBL:   CHEMBL1235583
Canonical SMILES:   NC(=N)c1ccc(cc1)NCc1nc2c(n1C)ccc(c2)Cn1c(C)nc2c1cccc2
Standard InChI:   InChI=1S/C25H25N7/c1-16-29-20-5-3-4-6-23(20)32(16)15-17-7-12-22-21(13-17)30-24(31(22)2)14-28-19-10-8-18(9-11-19)25(26)27/h3-13,28H,14-15H2,1-2H3,(H3,26,27)
Molecular Formula:   C25H25N7 Mol. Weight:   423.5129 Heavy Atoms:   32
Charge:   0 Is Chiral:   False logP:   5.0489
HBD:   3 HBA:   7 TPSA:   97.54
#Bonds:   36 #Rotatable Bonds:   6 Shape Complexity:   0.16
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 40 nM
BindingDB Ki : 40 nM