PDB Entry (1lpk)

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Visualizer: MichelaNGLo

PDB ID: 1lpk Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12061878 DOI: 10.1021/jm0111346
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 537.6 Depth: 18.6505
Hydrophobicity: 0.651934 Drug Score: 0.255456
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-(3-CARBAMIMIDOYL-BENZYL)-1H-INDOLE-2-CARBOXYLIC ACID 3-CARBAMIMIDOYL-BENZYLESTER
HET ID:   CBB PubChem:   138753152
DrugBank:   - ChEMBL:   CHEMBL1231665
Canonical SMILES:   NC(=N)C1CCCC(C1)COC(=O)c1cc2c(n1CC1=CC(CC=C1)C(=N)N)cccc2
Standard InChI:   InChI=1S/C25H31N5O2/c26-23(27)19-8-3-5-16(11-19)14-30-21-10-2-1-7-18(21)13-22(30)25(31)32-15-17-6-4-9-20(12-17)24(28)29/h1-3,5,7,10-11,13,17,19-20H,4,6,8-9,12,14-15H2,(H3,26,27)(H3,28,29)
Molecular Formula:   C25H31N5O2 Mol. Weight:   433.54593 Heavy Atoms:   32
Charge:   0 Is Chiral:   True logP:   5.579
HBD:   4 HBA:   7 TPSA:   130.97
#Bonds:   35 #Rotatable Bonds:   8 Shape Complexity:   0.4
Stereocomplexity:   0.12 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 28 nM
Binding MOAD Ki : 28 nM