PDB Entry (2jkh) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2jkh | Resolution: 1.25 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19101972 | DOI: 10.1002/anie.200804695 | |
Protein |
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Protein Name: Coagulation factor X | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00742 (FA10_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F10 | Gene ID: 2159 |
Pocket Descriptors | |
Volume: 828.416 | Depth: 19.996 |
Hydrophobicity: 0.674107 | Drug Score: 0.450605 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-[(3~{a}~{S},4~{R},8~{a}~{S},8~{b}~{R})-4-[5-(5-chloranylthiophen-2-yl)-1,2-oxazol-3-yl]-1,3-bis(oxidanylidene)-4,6,7,8,8~{a},8~{b}-hexahydro-3~{a}~{H}-pyrrolo[3,4-a]pyrrolizin-2-yl]propyl-trimethyl-azanium | ||
HET ID: BI7 | PubChem: 25113610 | |
DrugBank: - | ChEMBL: CHEMBL1626802 | |
Canonical SMILES: O=C1N(CCC[N+](C)(C)C)C(=O)[C@@H]2[C@H]1[C@H](c1noc(c1)c1ccc(s1)Cl)N1[C@H]2CCC1 | ||
Standard InChI: InChI=1S/C22H28ClN4O3S/c1-27(2,3)11-5-10-26-21(28)18-14-6-4-9-25(14)20(19(18)22(26)29)13-12-15(30-24-13)16-7-8-17(23)31-16/h7-8,12,14,18-20H,4-6,9-11H2,1-3H3/q+1/t14-,18-,19-,20-/m0/s1 | ||
Molecular Formula: C22H28ClN4O3S+ | Mol. Weight: 464.00073 | Heavy Atoms: 31 |
Charge: 1 | Is Chiral: True | logP: 3.1489 |
HBD: 0 | HBA: 7 | TPSA: 94.89 |
#Bonds: 39 | #Rotatable Bonds: 6 | Shape Complexity: 0.59090906 |
Stereocomplexity: 0.22727273 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 9 nM, Ki : 9 nM |
Binding MOAD | Ki : 9 nM, Ki : 9 nM |