PDB Entry (2jkh)

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PDB ID: 2jkh Resolution: 1.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19101972 DOI: 10.1002/anie.200804695
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 828.416 Depth: 19.996
Hydrophobicity: 0.674107 Drug Score: 0.450605
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-[(3~{a}~{S},4~{R},8~{a}~{S},8~{b}~{R})-4-[5-(5-chloranylthiophen-2-yl)-1,2-oxazol-3-yl]-1,3-bis(oxidanylidene)-4,6,7,8,8~{a},8~{b}-hexahydro-3~{a}~{H}-pyrrolo[3,4-a]pyrrolizin-2-yl]propyl-trimethyl-azanium
HET ID:   BI7 PubChem:   25113610
DrugBank:   - ChEMBL:   CHEMBL1626802
Canonical SMILES:   O=C1N(CCC[N+](C)(C)C)C(=O)[C@@H]2[C@H]1[C@H](c1noc(c1)c1ccc(s1)Cl)N1[C@H]2CCC1
Standard InChI:   InChI=1S/C22H28ClN4O3S/c1-27(2,3)11-5-10-26-21(28)18-14-6-4-9-25(14)20(19(18)22(26)29)13-12-15(30-24-13)16-7-8-17(23)31-16/h7-8,12,14,18-20H,4-6,9-11H2,1-3H3/q+1/t14-,18-,19-,20-/m0/s1
Molecular Formula:   C22H28ClN4O3S+ Mol. Weight:   464.00073 Heavy Atoms:   31
Charge:   1 Is Chiral:   True logP:   3.1489
HBD:   0 HBA:   7 TPSA:   94.89
#Bonds:   39 #Rotatable Bonds:   6 Shape Complexity:   0.59090906
Stereocomplexity:   0.22727273 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 9 nM, Ki : 9 nM
Binding MOAD Ki : 9 nM, Ki : 9 nM