PDB Entry (2xbv)

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Visualizer: MichelaNGLo

PDB ID: 2xbv Resolution: 1.66 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20650636 DOI: 10.1016/j.bmcl.2010.06.126
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 806.4 Depth: 20.004
Hydrophobicity: 0.682692 Drug Score: 0.445237
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R,4R)-1-(2,2-DIFLUORO-ETHYL)-PYRROLIDINE-3,4-DICARBOXYLIC ACID 3-[(5-CHLORO-PYRIDIN-2-YL)-AMIDE]-4-{[2-FLUORO-4-(2-OXO-2H-PYRIDIN-1-YL)-PHENYL]-AMIDE}
HET ID:   XBV PubChem:   24849206
DrugBank:   - ChEMBL:   CHEMBL1221913
Canonical SMILES:   FC(CN1C[C@@H]([C@H](C1)C(=O)Nc1ccc(cn1)Cl)C(=O)Nc1ccc(cc1F)n1ccccc1=O)F
Standard InChI:   InChI=1S/C24H21ClF3N5O3/c25-14-4-7-21(29-10-14)31-24(36)17-12-32(13-20(27)28)11-16(17)23(35)30-19-6-5-15(9-18(19)26)33-8-2-1-3-22(33)34/h1-10,16-17,20H,11-13H2,(H,30,35)(H,29,31,36)/t16-,17-/m0/s1
Molecular Formula:   C24H21ClF3N5O3 Mol. Weight:   519.90344 Heavy Atoms:   36
Charge:   0 Is Chiral:   True logP:   3.4992
HBD:   2 HBA:   8 TPSA:   96.33
#Bonds:   41 #Rotatable Bonds:   9 Shape Complexity:   0.25
Stereocomplexity:   0.083333336 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 3.700000047683716 nM
BindingDB Kd : 3.700000047683716 nM
Binding MOAD Ki : 7 nM