PDB Entry (2xbv) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2xbv | Resolution: 1.66 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 20650636 | DOI: 10.1016/j.bmcl.2010.06.126 | |
Protein |
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Protein Name: Coagulation factor X | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00742 (FA10_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F10 | Gene ID: 2159 |
Pocket Descriptors | |
Volume: 806.4 | Depth: 20.004 |
Hydrophobicity: 0.682692 | Drug Score: 0.445237 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (3R,4R)-1-(2,2-DIFLUORO-ETHYL)-PYRROLIDINE-3,4-DICARBOXYLIC ACID 3-[(5-CHLORO-PYRIDIN-2-YL)-AMIDE]-4-{[2-FLUORO-4-(2-OXO-2H-PYRIDIN-1-YL)-PHENYL]-AMIDE} | ||
HET ID: XBV | PubChem: 24849206 | |
DrugBank: - | ChEMBL: CHEMBL1221913 | |
Canonical SMILES: FC(CN1C[C@@H]([C@H](C1)C(=O)Nc1ccc(cn1)Cl)C(=O)Nc1ccc(cc1F)n1ccccc1=O)F | ||
Standard InChI: InChI=1S/C24H21ClF3N5O3/c25-14-4-7-21(29-10-14)31-24(36)17-12-32(13-20(27)28)11-16(17)23(35)30-19-6-5-15(9-18(19)26)33-8-2-1-3-22(33)34/h1-10,16-17,20H,11-13H2,(H,30,35)(H,29,31,36)/t16-,17-/m0/s1 | ||
Molecular Formula: C24H21ClF3N5O3 | Mol. Weight: 519.90344 | Heavy Atoms: 36 |
Charge: 0 | Is Chiral: True | logP: 3.4992 |
HBD: 2 | HBA: 8 | TPSA: 96.33 |
#Bonds: 41 | #Rotatable Bonds: 9 | Shape Complexity: 0.25 |
Stereocomplexity: 0.083333336 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 3.700000047683716 nM |
BindingDB | Kd : 3.700000047683716 nM |
Binding MOAD | Ki : 7 nM |