PDB Entry (1nfy)

Download

Visualizer: MichelaNGLo

PDB ID: 1nfy Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12593649 DOI: 10.1021/jm0203837
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 733.632 Depth: 24.2652
Hydrophobicity: 0.65625 Drug Score: 0.430113
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-({4-[(6-CHLORO-1-BENZOTHIEN-2-YL)SULFONYL]-2-OXOPIPERAZIN-1-YL}METHYL)BENZENECARBOXIMIDAMIDE
HET ID:   RTR PubChem:   447362
DrugBank:   DB08495 ChEMBL:   CHEMBL48813
Canonical SMILES:   Clc1ccc2c(c1)sc(c2)S(=O)(=O)N1CCN(C(=O)C1)Cc1ccc(cc1)C(=N)N
Standard InChI:   InChI=1S/C20H19ClN4O3S2/c21-16-6-5-15-9-19(29-17(15)10-16)30(27,28)25-8-7-24(18(26)12-25)11-13-1-3-14(4-2-13)20(22)23/h1-6,9-10H,7-8,11-12H2,(H3,22,23)
Molecular Formula:   C20H19ClN4O3S2 Mol. Weight:   462.97287 Heavy Atoms:   30
Charge:   0 Is Chiral:   False logP:   4.6285
HBD:   2 HBA:   8 TPSA:   144.18
#Bonds:   33 #Rotatable Bonds:   5 Shape Complexity:   0.2
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 1.2999999523162842 nM
BindingDB Ki : 1 nM, Ki : 1.2999999523162842 nM
Binding MOAD Ki : 1.2999999523162842 nM