PDB Entry (1ksn)

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Visualizer: MichelaNGLo

PDB ID: 1ksn Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12039587 DOI: 10.1016/S0960-894X(02)00213-5
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 687.04 Depth: 24.0898
Hydrophobicity: 0.663102 Drug Score: 0.399587
Pocket Similarity: Calculate
Ligand
Ligand Name:   METHYL-3-(4'-N-OXOPYRIDYLPHENOYL)-3-METHYL-2-(M-AMIDINOBENZYL)-PROPIONATE
HET ID:   FXV PubChem:   6323322
DrugBank:   - ChEMBL:   CHEMBL1232876
Canonical SMILES:   COC(=O)[C@@H]([C@H](NC(=O)c1ccc(cc1)c1cc[n+](cc1)[O-])C)Cc1cccc(c1)C(=[NH2+])N
Standard InChI:   InChI=1S/C25H26N4O4/c1-16(22(25(31)33-2)15-17-4-3-5-21(14-17)23(26)27)28-24(30)20-8-6-18(7-9-20)19-10-12-29(32)13-11-19/h3-14,16,22H,15H2,1-2H3,(H3,26,27)(H,28,30)/p+1/t16-,22-/m1/s1
Molecular Formula:   C25H27N4O4+ Mol. Weight:   447.5063 Heavy Atoms:   33
Charge:   1 Is Chiral:   True logP:   2.4879
HBD:   3 HBA:   6 TPSA:   132.47
#Bonds:   39 #Rotatable Bonds:   10 Shape Complexity:   0.2
Stereocomplexity:   0.08 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 0.4000000059604645 nM
Binding MOAD Ki : 0.4000000059604645 nM