PDB Entry (1ezq)

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Visualizer: MichelaNGLo

PDB ID: 1ezq Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 10966741 DOI: 10.1021/jm000940u
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 572.032 Depth: 16.9375
Hydrophobicity: 0.658683 Drug Score: 0.430164
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-[(3'-AMINOMETHYL-BIPHENYL-4-CARBONYL)-AMINO]-2-(3-CARBAMIMIDOYL-BENZYL)-BUTYRIC ACID METHYL ESTER
HET ID:   RPR PubChem:   5497056
DrugBank:   DB04424 ChEMBL:   CHEMBL48046
Canonical SMILES:   NCc1cccc(c1)c1ccc(cc1)C(=O)N[C@@H]([C@H](C(=O)OC)Cc1cccc(c1)C(=N)N)C
Standard InChI:   InChI=1S/C27H30N4O3/c1-17(24(27(33)34-2)15-18-5-3-8-23(13-18)25(29)30)31-26(32)21-11-9-20(10-12-21)22-7-4-6-19(14-22)16-28/h3-14,17,24H,15-16,28H2,1-2H3,(H3,29,30)(H,31,32)/t17-,24-/m1/s1
Molecular Formula:   C27H30N4O3 Mol. Weight:   458.5521 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   5.1378
HBD:   4 HBA:   7 TPSA:   131.29
#Bonds:   38 #Rotatable Bonds:   11 Shape Complexity:   0.22222222
Stereocomplexity:   0.074074075 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 0.8999999761581421 nM
BindingDB Ki : 0.8999999761581421 nM
Binding MOAD Ki : 0.8999999761581421 nM