PDB Entry (6etw) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6etw | Resolution: 1.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31475772 | DOI: 10.1002/cmdc.201900441 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 1763.58 | Depth: 30.4132 |
Hydrophobicity: 0.653543 | Drug Score: 0.982482 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [4-(2~{H}-1,2,3,4-tetrazol-5-yl)butanoylamino]azanium | ||
HET ID: BX5 | PubChem: 137332075 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: [NH3+]NC(=O)CCCc1n[nH]nn1 | ||
Standard InChI: InChI=1S/C5H10N6O/c6-7-5(12)3-1-2-4-8-10-11-9-4/h1-3,6H2,(H,7,12)(H,8,9,10,11)/p+1 | ||
Molecular Formula: C5H11N6O+ | Mol. Weight: 171.18044 | Heavy Atoms: 12 |
Charge: 1 | Is Chiral: False | logP: -1.8136 |
HBD: 3 | HBA: 5 | TPSA: 111.2 |
#Bonds: 16 | #Rotatable Bonds: 5 | Shape Complexity: 0.6 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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