PDB Entry (6etw)

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Visualizer: MichelaNGLo

PDB ID: 6etw Resolution: 1.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31475772 DOI: 10.1002/cmdc.201900441
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 1763.58 Depth: 30.4132
Hydrophobicity: 0.653543 Drug Score: 0.982482
Pocket Similarity: Calculate
Ligand
Ligand Name:   [4-(2~{H}-1,2,3,4-tetrazol-5-yl)butanoylamino]azanium
HET ID:   BX5 PubChem:   137332075
DrugBank:   - ChEMBL:   -
Canonical SMILES:   [NH3+]NC(=O)CCCc1n[nH]nn1
Standard InChI:   InChI=1S/C5H10N6O/c6-7-5(12)3-1-2-4-8-10-11-9-4/h1-3,6H2,(H,7,12)(H,8,9,10,11)/p+1
Molecular Formula:   C5H11N6O+ Mol. Weight:   171.18044 Heavy Atoms:   12
Charge:   1 Is Chiral:   False logP:   -1.8136
HBD:   3 HBA:   5 TPSA:   111.2
#Bonds:   16 #Rotatable Bonds:   5 Shape Complexity:   0.6
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-