PDB Entry (3kqd)

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Visualizer: MichelaNGLo

PDB ID: 3kqd Resolution: 2.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20100660 DOI: 10.1016/j.bmcl.2010.01.011
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 731.904 Depth: 25.6125
Hydrophobicity: 0.642512 Drug Score: 0.380645
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-6-(2'-(PYRROLIDIN-1-YLMETHYL)BIPHENYL-4-YL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE
HET ID:   LGL PubChem:   135740054, 18677450
DrugBank:   - ChEMBL:   CHEMBL578098
Canonical SMILES:   O=C1N(CCc2c1n(nc2C(F)(F)F)c1cccc(c1)c1n[nH]c(=O)[nH]1)c1ccc(cc1)c1ccccc1CN1CCCC1
Standard InChI:   InChI=1S/C32H28F3N7O2/c33-32(34,35)28-26-14-17-41(23-12-10-20(11-13-23)25-9-2-1-6-22(25)19-40-15-3-4-16-40)30(43)27(26)42(39-28)24-8-5-7-21(18-24)29-36-31(44)38-37-29/h1-2,5-13,18H,3-4,14-17,19H2,(H2,36,37,38,44)
Molecular Formula:   C32H28F3N7O2 Mol. Weight:   599.60565 Heavy Atoms:   44
Charge:   0 Is Chiral:   False logP:   5.4381
HBD:   2 HBA:   7 TPSA:   102.91
#Bonds:   52 #Rotatable Bonds:   7 Shape Complexity:   0.25
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 0.4000000059604645 nM
BindingDB Ki : 0.4000000059604645 nM