PDB Entry (3kqc)

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Visualizer: MichelaNGLo

PDB ID: 3kqc Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20100660 DOI: 10.1016/j.bmcl.2010.01.011
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 590.272 Depth: 20.2741
Hydrophobicity: 0.644809 Drug Score: 0.366069
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-(2'-(METHYLSULFONYL)BIPHENYL-4-YL)-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE
HET ID:   LGK PubChem:   135740055, 18677468
DrugBank:   - ChEMBL:   CHEMBL578474
Canonical SMILES:   O=C1N(CCc2c1n(nc2C(F)(F)F)c1cccc(c1)c1n[nH]c(=O)[nH]1)c1ccc(cc1)c1ccccc1S(=O)(=O)C
Standard InChI:   InChI=1S/C28H21F3N6O4S/c1-42(40,41)22-8-3-2-7-20(22)16-9-11-18(12-10-16)36-14-13-21-23(26(36)38)37(35-24(21)28(29,30)31)19-6-4-5-17(15-19)25-32-27(39)34-33-25/h2-12,15H,13-14H2,1H3,(H2,32,33,34,39)
Molecular Formula:   C28H21F3N6O4S Mol. Weight:   594.56433 Heavy Atoms:   42
Charge:   0 Is Chiral:   False logP:   5.3887
HBD:   2 HBA:   8 TPSA:   142.19
#Bonds:   49 #Rotatable Bonds:   6 Shape Complexity:   0.14285715
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 2.200000047683716 nM
BindingDB Ki : 2.200000047683716 nM
Binding MOAD Ki : 2.200000047683716 nM