PDB Entry (3kqb)

Download

Visualizer: MichelaNGLo

PDB ID: 3kqb Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20100660 DOI: 10.1016/j.bmcl.2010.01.011
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 701.376 Depth: 25.374
Hydrophobicity: 0.665025 Drug Score: 0.422626
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-(3-FLUORO-2'-(METHYLSULFONYL)BIPHENYL-4-YL)-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-3-(TRIFLUOROMETHYL)-1H-PYRAZOLE-5-CARBOXAMIDE
HET ID:   LGJ PubChem:   10232074, 135530746
DrugBank:   - ChEMBL:   CHEMBL591955
Canonical SMILES:   O=c1[nH]nc([nH]1)c1cccc(c1)n1nc(cc1C(=O)Nc1ccc(cc1F)c1ccccc1S(=O)(=O)C)C(F)(F)F
Standard InChI:   InChI=1S/C26H18F4N6O4S/c1-41(39,40)21-8-3-2-7-17(21)14-9-10-19(18(27)12-14)31-24(37)20-13-22(26(28,29)30)35-36(20)16-6-4-5-15(11-16)23-32-25(38)34-33-23/h2-13H,1H3,(H,31,37)(H2,32,33,34,38)
Molecular Formula:   C26H18F4N6O4S Mol. Weight:   586.5175 Heavy Atoms:   41
Charge:   0 Is Chiral:   False logP:   5.5852
HBD:   3 HBA:   8 TPSA:   150.98
#Bonds:   47 #Rotatable Bonds:   8 Shape Complexity:   0.07692308
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 0.5 nM
BindingDB Ki : 0.5 nM
Binding MOAD Ki : 0.5 nM