PDB Entry (3ffg)

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Visualizer: MichelaNGLo

PDB ID: 3ffg Resolution: 1.54 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20100660 DOI: 10.1016/j.bmcl.2010.01.011
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 751.232 Depth: 25.889
Hydrophobicity: 0.658654 Drug Score: 0.453538
Pocket Similarity: Calculate
Ligand
Ligand Name:   (R)-6-(2'-((3-hydroxypyrrolidin-1-yl)methyl)biphenyl-4-yl)-1-(3-(5-oxo-4,5-dihydro-1h-1,2,4-triazol-3-yl)phenyl)-3-(trifluoromethyl)-5,6-dihydro-1h-pyrazolo[3,4-c]pyridin-7(4h)-one
HET ID:   FFG PubChem:   136066129, 46232667
DrugBank:   - ChEMBL:   CHEMBL577677
Canonical SMILES:   O[C@@H]1CCN(C1)Cc1ccccc1c1ccc(cc1)N1CCc2c(C1=O)n(nc2C(F)(F)F)c1cccc(c1)c1n[nH]c(=O)[nH]1
Standard InChI:   InChI=1S/C32H28F3N7O3/c33-32(34,35)28-26-13-15-41(30(44)27(26)42(39-28)23-6-3-5-20(16-23)29-36-31(45)38-37-29)22-10-8-19(9-11-22)25-7-2-1-4-21(25)17-40-14-12-24(43)18-40/h1-11,16,24,43H,12-15,17-18H2,(H2,36,37,38,45)/t24-/m1/s1
Molecular Formula:   C32H28F3N7O3 Mol. Weight:   615.60504 Heavy Atoms:   45
Charge:   0 Is Chiral:   True logP:   4.4089
HBD:   3 HBA:   8 TPSA:   123.14
#Bonds:   54 #Rotatable Bonds:   7 Shape Complexity:   0.25
Stereocomplexity:   0.03125 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 0.8399999737739563 nM
BindingDB Ki : 0.8399999737739563 nM
Binding MOAD Ki : 0.8399999737739563 nM