PDB Entry (1v3x)

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Visualizer: MichelaNGLo

PDB ID: 1v3x Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15456260 DOI: 10.1021/jm049884d
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 593.984 Depth: 18.5257
Hydrophobicity: 0.682927 Drug Score: 0.51416
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2R)-4-[(6-CHLORO-2-NAPHTHYL)SULFONYL]-1-[(5-METHYL-4,5,6,7-TETRAHYDRO[1,3]THIAZOLO[5,4-C]PYRIDIN-2-YL)CARBONYL]PIPERAZINE-2-CARBOXAMIDE
HET ID:   D76 PubChem:   448997
DrugBank:   - ChEMBL:   CHEMBL1232084
Canonical SMILES:   CN1CCc2c(C1)sc(n2)C(=O)N1CCN(C[C@@H]1C(=O)N)S(=O)(=O)c1ccc2c(c1)ccc(c2)Cl
Standard InChI:   InChI=1S/C23H24ClN5O4S2/c1-27-7-6-18-20(13-27)34-22(26-18)23(31)29-9-8-28(12-19(29)21(25)30)35(32,33)17-5-3-14-10-16(24)4-2-15(14)11-17/h2-5,10-11,19H,6-9,12-13H2,1H3,(H2,25,30)/t19-/m1/s1
Molecular Formula:   C23H24ClN5O4S2 Mol. Weight:   534.0508 Heavy Atoms:   35
Charge:   0 Is Chiral:   True logP:   3.533
HBD:   1 HBA:   10 TPSA:   153.53
#Bonds:   40 #Rotatable Bonds:   5 Shape Complexity:   0.3478261
Stereocomplexity:   0.04347826 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind IC50 : 24 nM
BindingDB IC50 : 24 nM
Binding MOAD IC50 : 24 nM