PDB Entry (6etv) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6etv | Resolution: 1.18 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31475772 | DOI: 10.1002/cmdc.201900441 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 1496.19 | Depth: 29.0021 |
Hydrophobicity: 0.635593 | Drug Score: 0.922048 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [3-(2~{H}-1,2,3,4-tetrazol-5-yl)propanoylamino]azanium | ||
HET ID: BXE | PubChem: 137333960 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: [NH3+]NC(=O)CCc1n[nH]nn1 | ||
Standard InChI: InChI=1S/C4H8N6O/c5-6-4(11)2-1-3-7-9-10-8-3/h1-2,5H2,(H,6,11)(H,7,8,9,10)/p+1 | ||
Molecular Formula: C4H9N6O+ | Mol. Weight: 157.15385 | Heavy Atoms: 11 |
Charge: 1 | Is Chiral: False | logP: -2.2037 |
HBD: 3 | HBA: 5 | TPSA: 111.2 |
#Bonds: 15 | #Rotatable Bonds: 4 | Shape Complexity: 0.5 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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