PDB Entry (6etv)

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Visualizer: MichelaNGLo

PDB ID: 6etv Resolution: 1.18 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31475772 DOI: 10.1002/cmdc.201900441
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 1496.19 Depth: 29.0021
Hydrophobicity: 0.635593 Drug Score: 0.922048
Pocket Similarity: Calculate
Ligand
Ligand Name:   [3-(2~{H}-1,2,3,4-tetrazol-5-yl)propanoylamino]azanium
HET ID:   BXE PubChem:   137333960
DrugBank:   - ChEMBL:   -
Canonical SMILES:   [NH3+]NC(=O)CCc1n[nH]nn1
Standard InChI:   InChI=1S/C4H8N6O/c5-6-4(11)2-1-3-7-9-10-8-3/h1-2,5H2,(H,6,11)(H,7,8,9,10)/p+1
Molecular Formula:   C4H9N6O+ Mol. Weight:   157.15385 Heavy Atoms:   11
Charge:   1 Is Chiral:   False logP:   -2.2037
HBD:   3 HBA:   5 TPSA:   111.2
#Bonds:   15 #Rotatable Bonds:   4 Shape Complexity:   0.5
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-