PDB Entry (2w3k)

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PDB ID: 2w3k Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19231206 DOI: 10.1016/j.bmc.2009.01.063
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 575.936 Depth: 17.9287
Hydrophobicity: 0.672414 Drug Score: 0.368993
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2R,4S)-N^1^-(4-chlorophenyl)-N^2^-[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]-4-hydroxy-4-phenylpyrrolidine-1,2-dicarboxamide
HET ID:   L1D PubChem:   25210469
DrugBank:   - ChEMBL:   CHEMBL515107
Canonical SMILES:   O=C([C@H]1C[C@](CN1C(=O)Nc1ccc(cc1)Cl)(O)c1ccccc1)Nc1ccc(cc1F)n1ccccc1=O
Standard InChI:   InChI=1S/C29H24ClFN4O4/c30-20-9-11-21(12-10-20)32-28(38)35-18-29(39,19-6-2-1-3-7-19)17-25(35)27(37)33-24-14-13-22(16-23(24)31)34-15-5-4-8-26(34)36/h1-16,25,39H,17-18H2,(H,32,38)(H,33,37)/t25-,29-/m1/s1
Molecular Formula:   C29H24ClFN4O4 Mol. Weight:   546.9767 Heavy Atoms:   39
Charge:   0 Is Chiral:   True logP:   4.8466
HBD:   3 HBA:   8 TPSA:   103.67
#Bonds:   44 #Rotatable Bonds:   8 Shape Complexity:   0.13793103
Stereocomplexity:   0.06896552 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind IC50 : 0.07999999821186066 nM
BindingDB IC50 : 0.07999999821186066 nM
Binding MOAD IC50 : 0.07999999821186066 nM