PDB Entry (3cen)

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Visualizer: MichelaNGLo

PDB ID: 3cen Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18424044 DOI: 10.1016/j.bmcl.2008.03.092
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 642.048 Depth: 18.2603
Hydrophobicity: 0.663265 Drug Score: 0.390323
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-(2-(((5-CHLORO-2-PYRIDINYL)AMINO)SULFONYL)PHENYL)-4-(2-OXO-1(2H)-PYRIDINYL)BENZAMIDE
HET ID:   FXA PubChem:   24794406
DrugBank:   DB07800 ChEMBL:   CHEMBL402761
Canonical SMILES:   Clc1ccc(nc1)NS(=O)(=O)c1ccccc1NC(=O)c1ccc(cc1)n1ccccc1=O
Standard InChI:   InChI=1S/C23H17ClN4O4S/c24-17-10-13-21(25-15-17)27-33(31,32)20-6-2-1-5-19(20)26-23(30)16-8-11-18(12-9-16)28-14-4-3-7-22(28)29/h1-15H,(H,25,27)(H,26,30)
Molecular Formula:   C23H17ClN4O4S Mol. Weight:   480.9235 Heavy Atoms:   33
Charge:   0 Is Chiral:   False logP:   5.1658
HBD:   2 HBA:   8 TPSA:   118.54
#Bonds:   36 #Rotatable Bonds:   7 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 5.5 nM
BindingDB Ki : 5.5 nM
Binding MOAD Ki : 5.5 nM