PDB Entry (1lpz)

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Visualizer: MichelaNGLo

PDB ID: 1lpz Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12061878 DOI: 10.1021/jm0111346
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 541.12 Depth: 18.1989
Hydrophobicity: 0.651163 Drug Score: 0.291759
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-(3-carbamimidoylbenzyl)-N-(3,5-dichlorobenzyl)-4-methyl-1H-indole-2-carboxamide
HET ID:   CMB PubChem:   446982
DrugBank:   - ChEMBL:   CHEMBL92776
Canonical SMILES:   Clc1cc(CNC(=O)c2cc3c(n2Cc2cccc(c2)C(=N)N)cccc3C)cc(c1)Cl
Standard InChI:   InChI=1S/C25H22Cl2N4O/c1-15-4-2-7-22-21(15)12-23(25(32)30-13-17-9-19(26)11-20(27)10-17)31(22)14-16-5-3-6-18(8-16)24(28)29/h2-12H,13-14H2,1H3,(H3,28,29)(H,30,32)
Molecular Formula:   C25H22Cl2N4O Mol. Weight:   465.3744 Heavy Atoms:   32
Charge:   0 Is Chiral:   False logP:   6.7098
HBD:   3 HBA:   5 TPSA:   83.9
#Bonds:   35 #Rotatable Bonds:   7 Shape Complexity:   0.12
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 25 nM
BindingDB Ki : 25 nM
Binding MOAD Ki : 25 nM