PDB Entry (2vwo)

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Visualizer: MichelaNGLo

PDB ID: 2vwo Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 19200624 DOI: 10.1016/j.ejmech.2008.12.025
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 651.2 Depth: 18.8552
Hydrophobicity: 0.655914 Drug Score: 0.359763
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-CHLORO-THIOPHENE-2-CARBOXYLIC ACID ((3S,4S)-4-FLUORO- 1-{[2-FLUORO-4-(2-OXO-2H-PYRIDIN-1-YL)-PHENYLCARBAMOYL]-METHYL}-PYRROLIDIN-3-YL)-AMIDE
HET ID:   LZG PubChem:   42628063
DrugBank:   DB08143 ChEMBL:   CHEMBL550453
Canonical SMILES:   O=C(Nc1ccc(cc1F)n1ccccc1=O)CN1C[C@@H]([C@H](C1)F)NC(=O)c1ccc(s1)Cl
Standard InChI:   InChI=1S/C22H19ClF2N4O3S/c23-19-7-6-18(33-19)22(32)27-17-11-28(10-15(17)25)12-20(30)26-16-5-4-13(9-14(16)24)29-8-2-1-3-21(29)31/h1-9,15,17H,10-12H2,(H,26,30)(H,27,32)/t15-,17-/m0/s1
Molecular Formula:   C22H19ClF2N4O3S Mol. Weight:   492.92606 Heavy Atoms:   33
Charge:   0 Is Chiral:   True logP:   3.4841
HBD:   2 HBA:   8 TPSA:   111.68
#Bonds:   38 #Rotatable Bonds:   8 Shape Complexity:   0.22727273
Stereocomplexity:   0.09090909 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 31 nM
BindingDB Ki : 31 nM