PDB Entry (2w26) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2w26 | Resolution: 2.08 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 16161994 | DOI: 10.1021/jm050101d | |
Protein |
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Protein Name: Coagulation factor X | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00742 (FA10_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F10 | Gene ID: 2159 |
Pocket Descriptors | |
Volume: 767.744 | Depth: 20.5017 |
Hydrophobicity: 0.668203 | Drug Score: 0.328492 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide | ||
HET ID: RIV | PubChem: 9875401 | |
DrugBank: DB06228 | ChEMBL: CHEMBL198362 | |
Canonical SMILES: O=C1O[C@H](CN1c1ccc(cc1)N1CCOCC1=O)CNC(=O)c1ccc(s1)Cl | ||
Standard InChI: InChI=1S/C19H18ClN3O5S/c20-16-6-5-15(29-16)18(25)21-9-14-10-23(19(26)28-14)13-3-1-12(2-4-13)22-7-8-27-11-17(22)24/h1-6,14H,7-11H2,(H,21,25)/t14-/m0/s1 | ||
Molecular Formula: C19H18ClN3O5S | Mol. Weight: 435.88132 | Heavy Atoms: 29 |
Charge: 0 | Is Chiral: True | logP: 3.0408 |
HBD: 1 | HBA: 9 | TPSA: 116.42 |
#Bonds: 33 | #Rotatable Bonds: 6 | Shape Complexity: 0.31578946 |
Stereocomplexity: 0.05263158 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 0.4000000059604645 nM |
BindingDB | Ki : 0.6600000262260437 nM, Ki : 0.4000000059604645 nM, Ki : 1.600000023841858 nM, Ki : 8.5 nM, Ki : 0.699999988079071 nM, Ki : 2.200000047683716 nM, Ki : 4.590000152587891 nM, Ki : 400 nM, Ki : 1.399999976158142 nM, Ki : 14 nM, Ki : 700 nM |
Binding MOAD | Ki : 0.4000000059604645 nM |