PDB Entry (2phb)

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Visualizer: MichelaNGLo

PDB ID: 2phb Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17683371 DOI: 10.1111/j.1747-0285.2007.00539.x
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 607.104 Depth: 19.2042
Hydrophobicity: 0.657754 Drug Score: 0.34786
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2R,4R)-N~1~-(4-CHLOROPHENYL)-N~2~-[2-FLUORO-4-(2-OXOPYRIDIN-1(2H)-YL)PHENYL]-4-METHOXYPYRROLIDINE-1,2-DICARBOXAMIDE
HET ID:   230 PubChem:   11634458
DrugBank:   DB06920 ChEMBL:   CHEMBL476186
Canonical SMILES:   CO[C@@H]1C[C@@H](N(C1)C(=O)Nc1ccc(cc1)Cl)C(=O)Nc1ccc(cc1F)n1ccccc1=O
Standard InChI:   InChI=1S/C24H22ClFN4O4/c1-34-18-13-21(30(14-18)24(33)27-16-7-5-15(25)6-8-16)23(32)28-20-10-9-17(12-19(20)26)29-11-3-2-4-22(29)31/h2-12,18,21H,13-14H2,1H3,(H,27,33)(H,28,32)/t18-,21-/m1/s1
Molecular Formula:   C24H22ClFN4O4 Mol. Weight:   484.9073 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   3.9738
HBD:   2 HBA:   8 TPSA:   92.67
#Bonds:   39 #Rotatable Bonds:   8 Shape Complexity:   0.20833333
Stereocomplexity:   0.083333336 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 0.3199999928474426 nM
BindingDB IC50 : 0.3199999928474426 nM, IC50 : 0.5699999928474426 nM
Binding MOAD IC50 : 0.3199999928474426 nM